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SRX14183597: Other Sequencing of Pluralibacter gergoviae
1 ILLUMINA (Illumina HiSeq 4000) run: 2.8M spots, 831.5M bases, 442.8Mb downloads

External Id: MMMOSRA:283fe241-0aea-4fa8-ae42-3118877312ee
Submitted by: Modernising Medical Microbiology, NDM, Oxford University (ModMedMicOxford)
Study: Patient and environmental blaKPC-Enterobacterales diversity across six wards in a UK hospital over 6-12 months
show Abstracthide Abstract
This study by the TRACE (Tracking Carbapenemase-producing Enterobacteriaceae) Investigators' Group (Manchester hospitals; University of Oxford; Public Health England) investigated environmental and patient blaKPC-Enterobacterales diversity using systematic regular sampling of 349 wastewater-associated environmental sites across six wards, and corresponding carbapenem-resistant isolates from a subset of patients that were admitted to these wards over the study timeframe. To evaluate within-niche diversity, up to five isolates from each niche were sequenced at any given sampling timepoint.
Sample: Sequencing of isolates from wastewater sites and patients in 2016-2017
SAMN25989812 • SRS12026413 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: SINGLE
Runs: 1 run, 2.8M spots, 831.5M bases, 442.8Mb
Run# of Spots# of BasesSizePublished
SRR180309582,757,307831.5M442.8Mb2022-02-22

ID:
20041925

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